Tools and Databases

VirhostlncR

The VirhostlncR is a user-friendly online database of experimentally identified long non-coding RNAs (lncRNAs) perturbed by diverse viral infections in the mammalian host cell lines.

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Tools and Databases

REMEMProt

REMEMProt is an open resource of experimentally-identified proteins derived by mass spectrometry-based approaches uniquely from plasma membrane enriched samples in diverse biological contexts.

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Tools and Databases

Proteoark

Proteoark accepts protein file from Proteome Discoverer and MAXQUANT for analysis. ProteoArk provides four sections including Labelled, label-free, Differential expression, and Data visualization.

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Tools and Databases

HNCDrugResDb

HNCDrugResDb is a freely accessible database of molecular expression level alterations in proteins, multiple post-translational modifications, mRNAs, long non-coding RNAs and microRNAs associated with drug resistance in Head and Neck Cancers

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online degrees

Databases and Integrative Omics Data Analysis

Explore the intricate world of biological data through comprehensive guide on Databases and Integrative Omics Data Analysis, unraveling insights that bridge genetics, proteomics, and more.

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short courses

Development of Next-Generation Tools for Systems Biology

Empowering cutting-edge research, our project focuses on pioneering the creation of next-generation tools poised to revolutionize the field of systems biology.

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web experts

Development and Analysis of Signal Transduction Pathways

Explore the intricate world of cellular communication through our comprehensive resources on the development and analysis of signal transduction pathways.

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CIODS is a Yenepoya University's YenVision-2025 initiative, focusing on next-generation integrative omics research. Our key areas include databases and integrative omics data analysis, developing advanced tools for systems biology, and analyzing signal transduction pathways. Whether you're a researcher or enthusiast, CIODS offers a platform to delve into cutting-edge biological research. Explore our resources and join us in advancing the field.

Collaborating with the Centre for Integrative Omics Data Science (CIODS) is straightforward. We welcome:


  • Research Collaboration: Join forces on integrative omics projects.
  • Access Resources:Use our data analysis guides and tools.
  • Custom Solutions: Tailored support for your research needs.
  • Stay Connected: Keep up with CIODS through our website and social media.

To explore collaboration, contact us via our website. Together, we can drive breakthroughs in biological research.

At the Centre for Integrative Omics Data Science (CIODS), we offer a range of services that empower researchers and scientists in the field of biological sciences. Our services encompass:

  • Databases and Integrative Omics Data Analysis
  • Development of Next-Generation Tools for Systems Biology
  • Development and Analysis of Signal Transduction Pathways
  • Machine Learning approaches for Image Analysis and Pattern Recognition
About Us

Centre for Integrative Omics Data Science (CIODS) is a part of an initiative to undertake the next-generation integrative omics research on various fields of biological sciences and also its integration to Artificial Intelligence platforms for translational research. Supported under the YenVision-2025 of the Yenepoya University, the CIODS is envisioned towards assembly of global datasets and development of tools for analysis of integrated omics datasets (at DNA/RNA/protein/post-translational modification levels) in multiple themes including carcinogenesis, cancer drug resistance, infections, and signal transduction mechanisms.

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FACULTY

DATA SCIENTISTS

PUBLICATIONS

PROJECT

Dr.Rajesh Raju Director

Dr.Rajesh Raju
Dr. Niyas Rehman Assistant Professor

Dr. Niyas Rehman

Dr. Saptami Kanekar Assistant Professor

Dr. Saptami Kanekar

Dr. Abhithaj J Assistant Professor

Dr. Abhithaj J

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Databases and Integrative Omics Data Analysis

“Explore the intricate world of biological data through our comprehensive guide on Databases and Integrative Omics Data Analysis, unraveling insights that bridge genetics, proteomics, and more.”

Development of Next-Generation Tools for Systems Biology

“Empowering cutting-edge research, our project focuses on pioneering the creation of next-generation tools poised to revolutionize the field of systems biology.”

Development and Analysis of Signal Transduction Pathways

“Explore the intricate world of cellular communication through our comprehensive resources on the development and analysis of signal transduction pathways.”

Machine Learning approaches for Image Analysis and Pattern Recognition

“Explore cutting-edge machine learning approaches that revolutionize image analysis and pattern recognition, unlocking new insights and possibilities.”

More about us

The centre is constituted by the experts in these disciplines with a team of Data Scientists, Programmers and AI specialists to analyse, process and interpret molecular omics and clinical data and hence, formulation of creative integrative approaches for future endeavors. Coupled to the global genomic, transcriptomic, proteomic, metabolomic and signaling pathways through multiple themes, this centre also aims to develop efficient gateway platforms for systems biology research. We are keen to hire motivated, enthusiastic and passionate researchers who want to pursue their career in multi-omics and integrative omics research to drive global omis data science projects initiated at CIODS to transform CIODS into an institute of excellence.

Our Publications

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Cartlidge, M. K., Brown, K. K., Chaudhuri, N., Corte, T. J., Dieudé, P., John, L., Kelly, C., Khanna, D., McRorie, E., Nicol, L., Stewart, G., Walsh, S. L. F., Wijsenbeek, M., Hirani, N., & PASSWRD participants (2024). A modified Delphi exercise in physician-perceived risk factors for drug-induced pneumotoxicity in patients with rheumatological disease. BMC pulmonary medicine, 24(1), 547. https://doi.org/10.1186/s12890-024-03287-0
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Gupta, D. R., Dwivedi, P. S. R., Koshy, A. J., Anusha, S., Ranjitha, A., Rehman, N., & Kumar, P. (2024). Insights into benzothiazolyl-coupled azetidinone moieties toward EGFR binding and stability analysis—Evidence from molecular docking and dynamics simulation. Peptide Science. https://doi.org/10.1002/pep2.24382
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Ramesh, P., Nisar, M., Neha, Ammankallu, S., Babu, S., Nandakumar, R., Abhinand, C. S., Prasad, T. S. K., Codi, J. A. K., & Raju, R. (2024). Delineating protein biomarkers for gastric cancers: A catalogue of mass spectrometry-based markers and assessment of their suitability for targeted proteomics applications. Journal of Proteomics, 306, 105262. https://doi.org/10.1016/j.jprot.2024.105262

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Contact Us

Feel free to contact us anytime

Our passion is fueled by the pursuit of groundbreaking discoveries. We invite you to join us in this exciting journey by reaching out to us. Your questions, ideas, and collaboration opportunities are the building blocks of the next wave of innovation.

CIODS, 4th floor Yenepoya Ayurveda Medical College & Hospital
Kollarakodi, Naringana Village Bantwal, Manjanade, D.K
Karnataka - 575018, India