Number of publications in 2024 : 18

Daniel Thomas, S., Vijayakumar, K., John, L., Krishnan, D., Rehman, N., Revikumar, A., Kandel Codi, J. A., Prasad, T. S. K., S S, V., & Raju, R. (2024). Machine Learning Strategies in MicroRNA Research: Bridging Genome to Phenome. Omics : a journal of integrative biology, 10.1089/omi.2024.0047. Advance online publication. https://doi.org/10.1089/omi.2024.0047

• published on : 2024 May 15

Mahin, A., Chikmagalur Ravindra, S., Ramesh, P., Naik, P., Raju, R., Keshava Prasad, T. S., & Abhinanad, C. S. (2024). Unveiling Actin Cytoskeleton Role in Mediating Chikungunya-Associated Arthritis: An Integrative Proteome-Metabolome Study. Vector borne and zoonotic diseases (Larchmont, N.Y.), 10.1089/vbz.2024.0018. Advance online publication. https://doi.org/10.1089/vbz.2024.0018

• published on : 2024 May 07

Aravind, A., Nandakumar, R., Ahmed, M., Nisar, M., Palollathil, A., Kanichery, A., Sreelan, S., Sinan, K. M., Balaya, R. D. A., Vijayakumar, M., Prasad, T. S. K., & Raju, R. (2024). REMEMProt: a resource of membrane-enriched proteome profiles, their disease associations, and biomarker status. Life science alliance, 7(7), e202302443. https://doi.org/10.26508/lsa.202302443

• published on : 2024 May 07

Suchitha, G. P., Devasahayam Arokia Balaya, R., Prasad, T. S. K., & Dagamajalu, S. (2024). A signaling network map of Lipoxin (LXA4): an anti-inflammatory molecule. Inflammation research : official journal of the European Histamine Research Society ... [et al.], 10.1007/s00011-024-01885-6. Advance online publication. https://doi.org/10.1007/s00011-024-01885-6

• published on : 2024 Apr 26

Suchitha, G. P., Dagamajalu, S., Keshava Prasad, T. S., & Devasahayam Arokia Balaya, R. (2024). A Comprehensive Network Map of Interleukin-26 Signaling Pathway. Journal of interferon & cytokine research : the official journal of the International Society for Interferon and Cytokine Research, 10.1089/jir.2024.0026. Advance online publication. https://doi.org/10.1089/jir.2024.0026

• published on : 2024 Apr 19

Vishwakarma, R., Ramakrishnan, K., & Rehman, N. (2024). Riddling Substitution of "hsa" to "has" in the Enigmatic MicroRNA Nomenclature. Omics : a journal of integrative biology, 10.1089/omi.2023.0248. Advance online publication. https://doi.org/10.1089/omi.2023.0248

• published on : 2024 Apr 08

Thimmappa, P. Y., Nair, A. S., D'silva, S., Aravind, A., Mallya, S., Soman, S. P., Guruprasad, K. P., Shastry, S., Raju, R., Prasad, T. S. K., & Joshi, M. B. (2024). Neutrophils display distinct post-translational modifications in response to varied pathological stimuli. International immunopharmacology, 132, 111950. Advance online publication. https://doi.org/10.1016/j.intimp.2024.111950

• published on : 2024 Apr 03

Banjan, B., Koshy, A. J., Kalath, H., John, L., Soman, S., Raju, R., & Revikumar, A. (2024). Potential protein kinase inhibitors that target G-quadruplex DNA structures in the human telomeric regions. Molecular diversity, 10.1007/s11030-023-10768-7. Advance online publication. https://doi.org/10.1007/s11030-023-10768-7

• published on : 2024 Mar 21

Sanjeev, D., George, M., John, L., Gopalakrishnan, A. P., Priyanka, P., Mendon, S., Yandigeri, T., Nisar, M., Nisar, M., Kanekar, S., Balaya, R. D. A., & Raju, R. (2024). Tyr352 as a Predominant Phosphosite in the Understudied Kinase and Molecular Target, HIPK1: Implications for Cancer Therapy. Omics : a journal of integrative biology, 10.1089/omi.2023.0244. Advance online publication. https://doi.org/10.1089/omi.2023.0244

• published on : 2024 Mar 18

Priyanka, P., Gopalakrishnan, A. P., Nisar, M., Shivamurthy, P. B., George, M., John, L., Sanjeev, D., Yandigeri, T., Thomas, S. D., Rafi, A., Dagamajalu, S., Velikkakath, A. K. G., Abhinand, C. S., Kanekar, S., Prasad, T. S. K., Balaya, R. D. A., & Raju, R. (2024). A global phosphosite-correlated network map of Thousand And One Kinase 1 (TAOK1). The international journal of biochemistry & cell biology, 106558. Advance online publication. https://doi.org/10.1016/j.biocel.2024.106558

• published on : 2024 Mar 11

Shaji, V., Dagamajalu, S., Sanjeev, D., George, M., Kanekar, S., Prasad, G., Keshava Prasad, T. S., Raju, R., & Devasahayam Arokia Balaya, R. (2024). Deciphering the Receptor-Mediated Signaling Pathways of Interleukin-19 and Interleukin-20. Journal of interferon & cytokine research : the official journal of the International Society for Interferon and Cytokine Research, 10.1089/jir.2024.0009. Advance online publication. https://doi.org/10.1089/jir.2024.0009

• published on : 2024 Mar 06

Gopal, D., Muthuraj, R., Balaya, R. D. A., Kanekar, S., Ahmed, I., & Chandrasekaran, J. (2024). Computational discovery of novel FYN kinase inhibitors: a cheminformatics and machine learning-driven approach to targeted cancer and neurodegenerative therapy. Molecular diversity, 10.1007/s11030-024-10819-7. Advance online publication. https://doi.org/10.1007/s11030-024-10819-7

• published on : 2024 Feb 28

Hemavathi, K. N., Skariyachan, S., Raju, R., Keshava Prasad, T. S., & Abhinand, C. S. (2024). Computational screening of potential anti-inflammatory leads from Jeevaneeya Rasayana plants targeting COX-2 and 5- LOX by molecular docking and dynamic simulation approaches. Computers in biology and medicine, 171, 108164. Advance online publication. https://doi.org/10.1016/j.compbiomed.2024.108164

• published on : 2024 Feb 15

Niarakis, A., Ostaszewski, M., Mazein, A., Kuperstein, I., Kutmon, M., Gillespie, M. E., Funahashi, A., Acencio, M. L., Hemedan, A., Aichem, M., Klein, K., Czauderna, T., Burtscher, F., Yamada, T. G., Hiki, Y., Hiroi, N. F., Hu, F., Pham, N., Ehrhart, F., Willighagen, E. L., … COVID-19 Disease Map Community (2024). Drug-target identification in COVID-19 disease mechanisms using computational systems biology approaches. Frontiers in immunology, 14, 1282859. https://doi.org/10.3389/fimmu.2023.1282859

• published on : 2024 Feb 13

Karpagavalli, K., Magdaline, J. D., Chithambarathanu, T., Vijaya, P., & Amjesh, R. (2024). Quantum chemical evaluation, ELF, LOL analysis, Fukui, herbicide-likeness and molecular docking studies of 4-methyl-phenoxyacetic acid, 4-acetyl-phenoxyacetic acid and 4-tert-butyl-phenoxyacetic acid – a comparative study. Structural Chemistry. https://doi.org/10.1007/s11224-023-02271-4

• published on : 2024 Feb 03

Giridhara Prema, S., Chandrasekaran, J., Kanekar, S., George, M., Prasad, T. S. K., Raju, R., Dagamajalu, S., & Balaya, R. D. A. (2024). Cisplatin and Procaterol Combination in Gastric Cancer? Targeting Checkpoint Kinase 1 for Cancer Drug Discovery and Repurposing by an Integrated Computational and Experimental Approach. Omics : a journal of integrative biology, 10.1089/omi.2023.0163. Advance online publication. https://doi.org/10.1089/omi.2023.0163

• published on : 2024 jan 08

Krishnan, D., Babu, S., Raju, R., Veettil, M. V., Prasad, T. S. K., & Abhinand, C. S. (2024). Epstein-Barr Virus: Human Interactome Reveals New Molecular Insights into Viral Pathogenesis for Potential Therapeutics and Antiviral Drug Discovery. Omics : a journal of integrative biology, 10.1089/omi.2023.0241. Advance online publication. https://doi.org/10.1089/omi.2023.0241

• published on : 2024 jan 08

Mahin, A., Soman, S. P., Modi, P. K., Raju, R., Keshava Prasad, T. S., & Abhinand, C. S. (2024). Meta-analysis of the serum/plasma proteome identifies significant associations between COVID-19 with Alzheimer's/Parkinson's diseases. Journal of neurovirology, 10.1007/s13365-023-01191-7. Advance online publication. https://doi.org/10.1007/s13365-023-01191-7

• published on : 2024 Jan 02

Sreelakshmi, K., Hemavathi, K. N., Raju, R., Sameer, K. V. B., Keshava Prasad, T. S., Sudhakaran, P. R., & Abhinand, C. S. (2023). Identification and stability analysis of potential ADP-ribose modification sites on vascular endothelial growth factor (VEGF) through molecular dynamics simulation. Journal of biomolecular structure & dynamics, 1–9. Advance online publication. https://doi.org/10.1080/07391102.2023.2297821

• published on : 2023 Dec 26

Ramakrishnan, K., Babu, S., Shaji, V., Soman, S., Leelamma, A., Rehman, N., & Raju, R. (2023). Hepatitis B Virus Modulated Transcriptional Regulatory Map of Hepatic Cellular MicroRNAs. Omics : a journal of integrative biology, 27(12), 581–597. https://doi.org/10.1089/omi.2023.0171

• published on : 2023 Dec 8

Varghese, B., Babu, S., Jala, A., Das, P., Raju, R., Borkar, R. M., & Adela, R. (2023). Integrative Placental Multi-Omics Analysis Reveals Perturbed Pathways and Potential Prognostic Biomarkers in Gestational Hypertension. Archives of medical research, 55(1), 102909. Advance online publication. https://doi.org/10.1016/j.arcmed.2023.102909

• published on : 2023 Nov 18

Kalath, H., Koshy, A. J., Banjan, B., Soman, S., Hosadevasthana, G., Raju, R., Rehman, N., & Revikumar, A. (2023). In-silico studies of Brassica oleracea active compounds and their role in thyroid peroxidase activity. Journal of biomolecular structure & dynamics, 1–17. Advance online publication. https://doi.org/10.1080/07391102.2023.2270601

• published on : 2023 Oct 23

Thatai, A. K. S., Ammankallu, S., Devasahayam Arokia Balaya, R., Soman, S. P., Nisar, M., Babu, S., John, L., George, A., Anto, C. K., Sanjeev, D., Kandiyil, M. K., Raj, S. S., Awasthi, K., Vinodchandra, S. S., Prasad, T. S. K., & Raju, R. (2023). VirhostlncR: A comprehensive database to explore lncRNAs and their targets in viral infections. Computers in biology and medicine, 164, 107279. https://doi.org/10.1016/j.compbiomed.2023.107279

• published on : 2023 Sep 16

Devadasan, M. J., Ramesha, K. P., Ramesh, P., Kootimole, C. N., Jeyakumar, S., Ashwitha, A., Ammankallu, S., Rai, A. B., Kumaresan, A., Vedamurthy, V. G., Raju, R., Das, D. N., Kataktalware, M. A., & Prasad, T. S. K. (2023). Exploring molecular dynamic indicators associated with reproductive performance of Bos indicus cattle in blood plasma samples through data-independent acquisition mass spectrometry. Journal of proteomics, 285, 104950. https://doi.org/10.1016/j.jprot.2023.104950

• published on : 2023 Aug 15

Banjan, B., Krishnan, D., Koshy, A. J., Soman, S., Leelamma, A., Raju, R., & Revikumar, A. (2023). In-silico screening and identification of potential drug-like compounds for dengue-associated thrombocytopenia from Carica papaya leaf extracts. Journal of biomolecular structure & dynamics, 1–19. Advance online publication. https://doi.org/10.1080/07391102.2023.2230293

• published on : 2023 Jul 2

Ramesh, P., Behera, S. K., Kotimoole, C. N., Mohanty, V., Raju, R., Prasad, T. S. K., & Codi, J. A. K. (2023). Mining proteomics data to extract post-translational modifications associated with gastric cancer. Amino acids, 55(8), 993–1001. https://doi.org/10.1007/s00726-023-03287-0

• published on : 2023 June 13

Sanjeev, D., Dagamajalu, S., Shaji, V., George, M., Subbannayya, Y., Prasad, T. S. K., Raju, R., & Devasahayam Arokia Balaya, R. (2023). A network map of macrophage-stimulating protein (MSP) signaling. Journal of cell communication and signaling, 17(3), 1113–1120. https://doi.org/10.1007/s12079-023-00755-w

• published on : 2023 May 4

Devasahayam Arokia Balaya, R., Chandrasekaran, J., Kanekar, S., Kumar Modi, P., Dagamajalu, S., Gopinathan, K., Raju, R., & Prasad, T. S. K. (2023). Calcium/calmodulin-dependent protein kinase kinase 2 (CAMKK2) inhibitors: a novel approach in small molecule discovery. Journal of biomolecular structure & dynamics, 1–11. Advance online publication. https://doi.org/10.1080/07391102.2023.2193999

• published on : 2023 Apr 8

Upadhyay, S. S., Devasahayam Arokia Balaya, R., Parate, S. S., Dagamajalu, S., Keshava Prasad, T. S., Shetty, R., & Raju, R. (2023). An assembly of TROP2-mediated signaling events. Journal of cell communication and signaling, 17(3), 1105–1111. https://doi.org/10.1007/s12079-023-00742-1

• published on : 2023 Apr 4

Manjunath, V., Thenral, S. G., Lakshmi, B. R., Nalini, A., Bassi, A., Karthikeyan, K. P., Piyusha, K., Menon, R., Malhotra, A., Praveena, L. S., Anjanappa, R. M., & Murugan, S. M. S. (2023). Large Region of Homozygous (ROH) Identified in Indian Patients with Autosomal Recessive Limb-Girdle Muscular Dystrophy with p. Thr182Pro Variant in SGCB Gene. Human Mutation. https://doi.org/10.1155/2023/4362273

• published on : 2023 Mar 28

Suchitha, G. P., Balaya, R. D. A., Raju, R., Keshava Prasad, T. S., & Dagamajalu, S. (2023). A network map of cytoskeleton-associated protein 4 (CKAP4) mediated signaling pathway in cancer. Journal of cell communication and signaling, 17(3), 1097–1104. https://doi.org/10.1007/s12079-023-00739-w

• published on : 2023 Mar 21

Chatterjee, O., Gopalakrishnan, L., Pullimamidi, D., Raj, C., Yelamanchi, S., Gangadharappa, B. S., Nair, B., Mahadevan, A., Raju, R., & Keshava Prasad, T. S. (2023). A molecular network map of orexin-orexin receptor signaling system. Journal of cell communication and signaling, 17(1), 217–227. https://doi.org/10.1007/s12079-022-00700-3

• published on : 2023 Mar 17

Revikumar A. (2023). An Omics Strategy for Translational Bioinformatics and Rapid COVID-19 Drug Repurposing. Omics : a journal of integrative biology, 27(3), 109–115. https://doi.org/10.1089/omi.2022.0157

• published on : 2023 Mar 15

Abhinand, C. S., Galipon, J., Mori, M., Ramesh, P., Prasad, T. S. K., Raju, R., Sudhakaran, P. R., & Tomita, M. (2023). Temporal phosphoproteomic analysis of VEGF-A signaling in HUVECs: an insight into early signaling events associated with angiogenesis. Journal of cell communication and signaling, 17(3), 1067–1079. https://doi.org/10.1007/s12079-023-00736-z

• published on : 2023 Mar 7

Kumar, S., Balaya, R. D. A., Kanekar, S., Raju, R., Prasad, T. S. K., & Kandasamy, R. K. (2023). Computational tools for exploring peptide-membrane interactions in gram-positive bacteria. Computational and structural biotechnology journal, 21, 1995–2008. https://doi.org/10.1016/j.csbj.2023.02.051

• published on : 2023 Mar 2

Sankaran, D., Amjesh, R., Paul, A. M., George, B., Kala, R., Saini, S., & Kumar, R. (2023). Hyperactivation of p21-Activated Kinases in Human Cancer and Therapeutic Sensitivity. Biomedicines, 11(2), 462. https://doi.org/10.3390/biomedicines11020462

• published on : 2023 Feb 5

Mol, P., Balaya, R. D. A., Dagamajalu, S., Babu, S., Chandrasekaran, P., Raghavan, R., Suresh, S., Ravishankara, N., Raju, A. H., Nair, B., Modi, P. K., Mahadevan, A., Prasad, T. S. K., & Raju, R. (2023). A network map of GDNF/RET signaling pathway in physiological and pathological conditions. Journal of cell communication and signaling, 17(3), 1089–1095. https://doi.org/10.1007/s12079-023-00726-1

• published on : 2023 Jan 30

Abhinand, C. S., Prabhakaran, A. A., Krishnamurthy, A., Raju, R., Keshava Prasad, T. S., Nair, A. S., Rajasekharan, K. N., Oommen, O. V., & Sudhakaran, P. R. (2022). SARS-CoV-2 variants infectivity prediction and therapeutic peptide design using computational approaches. Journal of biomolecular structure & dynamics, 1–12. Advance online publication. https://doi.org/10.1080/07391102.2022.2160819

• published on : 2022 Dec 26

Abhinand, C. S., Ibrahim, J., Keshava Prasad, T. S., Raju, R., Oommen, O. V., & Nair, A. S. (2022). Molecular docking and dynamics studies for the identification of Nipah virus glycoprotein inhibitors from Indian medicinal plants. Journal of biomolecular structure & dynamics, 1–8. Advance online publication. https://doi.org/10.1080/07391102.2022.2153169

• published on : 2022 Dec 06

Ramesh, P., Babu, S., Ammankallu, S., Codi, J. A. K., Prasad, T. S. K., & Raju, R. (2023). Helicobacter pylori regulated microRNA map of human gastric cells. Helicobacter, 28(1), e12941. https://doi.org/10.1111/hel.12941

• published on : 2022 Dec 05

Dagamajalu, S., Rex, D. A. B., Suchitha, G. P., Rai, A. B., Kumar, S., Joshi, S., Raju, R., & Prasad, T. S. K. (2023). A network map of discoidin domain receptor 1(DDR1)-mediated signaling in pathological conditions. Journal of cell communication and signaling, 17(3), 1081–1088. https://doi.org/10.1007/s12079-022-00714-x

• published on : 2022 Dec 1

Terlouw, B. R., Blin, K., Navarro-Muñoz, J. C., Avalon, N. E., Chevrette, M. G., Egbert, S., Lee, S., Meijer, D., Recchia, M. J. J., Reitz, Z. L., van Santen, J. A., Selem-Mojica, N., Tørring, T., Zaroubi, L., Alanjary, M., Aleti, G., Aguilar, C., Al-Salihi, S. A. A., Augustijn, H. E., Avelar-Rivas, J. A., … Medema, M. H. (2023). MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters. Nucleic acids research, 51(D1), D603–D610. https://doi.org/10.1093/nar/gkac1049

• published on : 2022 Nov 18

Kumari, G., Rex, D. A. B., Goswami, S., Mukherjee, S., Biswas, S., Maurya, P., Jain, R., Garg, S., Prasad, T. S. K., Pati, S., Ramalingam, S., Mohandas, N., & Singh, S. (2022). Dynamic Palmitoylation of Red Cell Membrane Proteins Governs Susceptibility to Invasion by the Malaria Parasite, Plasmodium falciparum. ACS infectious diseases, 8(10), 2106–2118. https://doi.org/10.1021/acsinfecdis.2c00199

• published on : 2022 Oct 14

Anam, Z., Kumari, G., Mukherjee, S., Rex, D. A. B., Biswas, S., Maurya, P., Ravikumar, S., Gupta, N., Kushawaha, A. K., Sah, R. K., Chaurasiya, A., Singhal, J., Singh, N., Kaushik, S., Prasad, T. S. K., Pati, S., Ranganathan, A., & Singh, S. (2022). Complementary crosstalk between palmitoylation and phosphorylation events in MTIP regulates its role during Plasmodium falciparum invasion. Frontiers in cellular and infection microbiology, 12, 924424. https://doi.org/10.3389/fcimb.2022.924424

• published on : 2022 Sep 29

Gopalakrishnan, L., Chatterjee, O., Ravishankar, N., Suresh, S., Raju, R., Mahadevan, A., & Prasad, T. S. K. (2022). Opioid receptors signaling network. Journal of cell communication and signaling, 16(3), 475–483. https://doi.org/10.1007/s12079-021-00653-z

• published on : 2022 Sep 16

Antil, N., Arefian, M., Kandiyil, M. K., Awasthi, K., Prasad, T. S. K., & Raju, R. (2022). The Core Human MicroRNAs Regulated by Toxoplasma gondii. MicroRNA (Shariqah, United Arab Emirates), 11(2), 163–174. https://doi.org/10.2174/2211536611666220428130250

• published on : 2022 Aug 15

Rex, D. A. B., Dagamajalu, S., Gouda, M. M., Suchitha, G. P., Chanderasekaran, J., Raju, R., Prasad, T. S. K., & Bhandary, Y. P. (2023). A comprehensive network map of IL-17A signaling pathway. Journal of cell communication and signaling, 17(1), 209–215. https://doi.org/10.1007/s12079-022-00686-y

• published on : 2022 Jul 15

Rex, D. A. B., Keshava Prasad, T. S., & Kandasamy, R. K. (2022). Revisiting Regulated Cell Death Responses in Viral Infections. International journal of molecular sciences, 23(13), 7023. https://doi.org/10.3390/ijms23137023

• published on : 2022 Jun 24

Aravind, A., Palollathil, A., Rex, D. A. B., Kumar, K. M. K., Vijayakumar, M., Shetty, R., Codi, J. A. K., Prasad, T. S. K., & Raju, R. (2022). A multi-cellular molecular signaling and functional network map of C-C motif chemokine ligand 18 (CCL18): a chemokine with immunosuppressive and pro-tumor functions. Journal of cell communication and signaling, 16(2), 293–300. https://doi.org/10.1007/s12079-021-00633-3

• published on : 2022 Jun 16

Revikumar, A., Kashyap, V., Palollathil, A., Aravind, A., Raguraman, R., Kumar, K. M. K., Vijayakumar, M., Prasad, T. S. K., & Raju, R. (2022). Multiple G-quadruplex binding ligand induced transcriptomic map of cancer cell lines. Journal of cell communication and signaling, 16(1), 129–135. https://doi.org/10.1007/s12079-021-00637-z

• published on : 2022 Mar 16