Poruthukaren, K., Henna, F., Nisar, M., Sreelan, S., Samseera, Kotian, S., & Raju, R. (2024). HomoeOmicsDB: A global reference platform for accelerating basic and application research in homeopathy. International Journal of High Dilution Research - ISSN 1982-6206, 24(1), 40–41. https://doi.org/10.51910/ijhdr.v24i1.1484 published on : 2024 Dec 02
Kalath, H., Vishwakarma, R., Banjan, B., Ramakrishnan, K., Koshy, A. J., Raju, R., Rehman, N., & Revikumar, A. (2024). In-silico studies on evaluating the liver-protective effectiveness of a polyherbal formulation in preventing hepatocellular carcinoma progression. In silico pharmacology, 12(2), 109. https://doi.org/10.1007/s40203-024-00285-2 published on : 2024 Nov 19
Hemavathi, K. N., Middha, S. K., Raju, R., Pilankatta, R., Keshava Prasad, T. S., & Abhinand, C. S. (2024). Computational screening of phytocompounds from C. amboinicus identifies potential inhibitors of influenza A (H3N2) virus by targeting hemagglutinin. Journal of biomolecular structure & dynamics, 1–13. Advance online publication. https://doi.org/10.1080/07391102.2024.2424940 published on : 2024 Nov 09
Cartlidge, M. K., Brown, K. K., Chaudhuri, N., Corte, T. J., Dieudé, P., John, L., Kelly, C., Khanna, D., McRorie, E., Nicol, L., Stewart, G., Walsh, S. L. F., Wijsenbeek, M., Hirani, N., & PASSWRD participants (2024). A modified Delphi exercise in physician-perceived risk factors for drug-induced pneumotoxicity in patients with rheumatological disease. BMC pulmonary medicine, 24(1), 547. https://doi.org/10.1186/s12890-024-03287-0 published on : 2024 Oct 31
Palollathil, A., Nandakumar, R., Ahmed, M., Velikkakath, A. K. G., Nisar, M., Nisar, M., Devasahayam Arokia Balaya, R., Parate, S. S., Hanehalli, V., Mahin, A., Mathew, R. T., Shetty, R., Codi, J. A. K., Revikumar, A., Vijayakumar, M., Prasad, T. S. K., & Raju, R. (2024). HNCDrugResDb: a platform for deciphering drug resistance in head and neck cancers. Scientific reports, 14(1), 25327. https://doi.org/10.1038/s41598-024-75861-9 published on : 2024 Oct 25
Gupta, D. R., Dwivedi, P. S. R., Koshy, A. J., Anusha, S., Ranjitha, A., Rehman, N., & Kumar, P. (2024). Insights into benzothiazolyl-coupled azetidinone moieties toward EGFR binding and stability analysis—Evidence from molecular docking and dynamics simulation. Peptide Science. https://doi.org/10.1002/pep2.24382 published on : 2024 Aug 28
Ramesh, P., Nisar, M., Neha, Ammankallu, S., Babu, S., Nandakumar, R., Abhinand, C. S., Prasad, T. S. K., Codi, J. A. K., & Raju, R. (2024). Delineating protein biomarkers for gastric cancers: A catalogue of mass spectrometry-based markers and assessment of their suitability for targeted proteomics applications. Journal of Proteomics, 306, 105262. https://doi.org/10.1016/j.jprot.2024.105262 published on : 2024 Jul 23
Rajesh, G. D., Koshy, A. J., Akshay, S. D., Dwivedi, P. S. R., Ashtekar, H., Rehman, N., & Kumar, P. (2024). Inhibition of β-lactamase by novel benzothiazole-coupled azetidinone derivatives: A comprehensive study using an in-silico and in-vitro approaches against multi drug resistant bacteria. Journal of Computational Biophysics and Chemistry, 12(7), 123-134. https://doi.org/10.1142/S2737416524500340 published on : 2024 Jul 09
Banjan, B., Vishwakarma, R., Ramakrishnan, K., Dev, R. R., Kalath, H., Kumar, P., Soman, S., Raju, R., Revikumar, A., Rehman, N., & Abhinand, C. S. (2024). Targeting AFP-RARβ complex formation: a potential strategy for treating AFP-positive hepatocellular carcinoma. Molecular diversity, 10.1007/s11030-024-10915-8. Advance online publication. https://doi.org/10.1007/s11030-024-10915-8 published on : 2024 Jul 02
John, L., George, M., Dcunha, L., Nisar, M., Sanjeev, D., Pahal, P., Perunelly Gopalakrishnan, A., Basthikoppa Shivamurthy, P., Sreelan, S., Yandigeri, T., Kanekar, S., Raju, R., & Devasahayam Arokia Balaya, R. (2024). Elucidating the phosphoregulatory network of predominant phosphosite in AXL kinase: An integrative bioinformatic approach. Journal of Proteins and Proteomics. https://doi.org/10.1007/s42485-024-00147-7 published on : 2024 Jun 19
Sanjeev, D., Mendon, S., George, M., John, L., Perunelly Gopalakrishnan, A., Nisar, M., Rafi, A., Priyanka, P., Yandigeri, T., Raju, R., Kanekar, S., & Devasahayam Arokia Balaya, R. (2024). Exploring the phospho-landscape of NEK6 kinase: Systematic annotation of phosphosites and their implications as biomarkers in carcinogenesis. Journal of Proteins and Proteomics. https://doi.org/10.1007/s42485-024-00146-8 published on : 2024 Jun 15
Ramakrishnan, K., Vishwakarma, R., Dev, R. R., Raju, R., & Rehman, N. (2024). Etiologically Significant microRNAs in Hepatitis B Virus-Induced Hepatocellular Carcinoma. Omics : a journal of integrative biology, 10.1089/omi.2024.0071. Advance online publication. https://doi.org/10.1089/omi.2024.0071 published on : 2024 May 31
Daniel Thomas, S., Vijayakumar, K., John, L., Krishnan, D., Rehman, N., Revikumar, A., Kandel Codi, J. A., Prasad, T. S. K., S S, V., & Raju, R. (2024). Machine Learning Strategies in MicroRNA Research: Bridging Genome to Phenome. Omics : a journal of integrative biology, 10.1089/omi.2024.0047. Advance online publication. https://doi.org/10.1089/omi.2024.0047 published on : 2024 May 15
Banjan, B., Raju, R., Keshava Prasad, T. S., & Abhinand, C. S. (2024). Computational identification of potential bioactive compounds from Triphala against alcoholic liver injury by targeting alcohol dehydrogenase. Molecular diversity, 10.1007/s11030-024-10879-9. Advance online publication. https://doi.org/10.1007/s11030-024-10879-9 published on : 2024 May 14
Mahin, A., Chikmagalur Ravindra, S., Ramesh, P., Naik, P., Raju, R., Keshava Prasad, T. S., & Abhinanad, C. S. (2024). Unveiling Actin Cytoskeleton Role in Mediating Chikungunya-Associated Arthritis: An Integrative Proteome-Metabolome Study. Vector borne and zoonotic diseases (Larchmont, N.Y.), 10.1089/vbz.2024.0018. Advance online publication. https://doi.org/10.1089/vbz.2024.0018 published on : 2024 May 07
Aravind, A., Nandakumar, R., Ahmed, M., Nisar, M., Palollathil, A., Kanichery, A., Sreelan, S., Sinan, K. M., Balaya, R. D. A., Vijayakumar, M., Prasad, T. S. K., & Raju, R. (2024). REMEMProt: a resource of membrane-enriched proteome profiles, their disease associations, and biomarker status. Life science alliance, 7(7), e202302443. https://doi.org/10.26508/lsa.202302443 published on : 2024 May 07
Suchitha, G. P., Devasahayam Arokia Balaya, R., Prasad, T. S. K., & Dagamajalu, S. (2024). A signaling network map of Lipoxin (LXA4): an anti-inflammatory molecule. Inflammation research : official journal of the European Histamine Research Society ... [et al.], 10.1007/s00011-024-01885-6. Advance online publication. https://doi.org/10.1007/s00011-024-01885-6 published on : 2024 Apr 26
Suchitha, G. P., Dagamajalu, S., Keshava Prasad, T. S., & Devasahayam Arokia Balaya, R. (2024). A Comprehensive Network Map of Interleukin-26 Signaling Pathway. Journal of interferon & cytokine research : the official journal of the International Society for Interferon and Cytokine Research, 10.1089/jir.2024.0026. Advance online publication. https://doi.org/10.1089/jir.2024.0026 published on : 2024 Apr 19
Vishwakarma, R., Ramakrishnan, K., & Rehman, N. (2024). Riddling Substitution of "hsa" to "has" in the Enigmatic MicroRNA Nomenclature. Omics : a journal of integrative biology, 10.1089/omi.2023.0248. Advance online publication. https://doi.org/10.1089/omi.2023.0248 published on : 2024 Apr 08
Thimmappa, P. Y., Nair, A. S., D'silva, S., Aravind, A., Mallya, S., Soman, S. P., Guruprasad, K. P., Shastry, S., Raju, R., Prasad, T. S. K., & Joshi, M. B. (2024). Neutrophils display distinct post-translational modifications in response to varied pathological stimuli. International immunopharmacology, 132, 111950. Advance online publication. https://doi.org/10.1016/j.intimp.2024.111950 published on : 2024 Apr 03
Banjan, B., Koshy, A. J., Kalath, H., John, L., Soman, S., Raju, R., & Revikumar, A. (2024). Potential protein kinase inhibitors that target G-quadruplex DNA structures in the human telomeric regions. Molecular diversity, 10.1007/s11030-023-10768-7. Advance online publication. https://doi.org/10.1007/s11030-023-10768-7 published on : 2024 Mar 21
Sanjeev, D., George, M., John, L., Gopalakrishnan, A. P., Priyanka, P., Mendon, S., Yandigeri, T., Nisar, M., Nisar, M., Kanekar, S., Balaya, R. D. A., & Raju, R. (2024). Tyr352 as a Predominant Phosphosite in the Understudied Kinase and Molecular Target, HIPK1: Implications for Cancer Therapy. Omics : a journal of integrative biology, 10.1089/omi.2023.0244. Advance online publication. https://doi.org/10.1089/omi.2023.0244 published on : 2024 Mar 18
Priyanka, P., Gopalakrishnan, A. P., Nisar, M., Shivamurthy, P. B., George, M., John, L., Sanjeev, D., Yandigeri, T., Thomas, S. D., Rafi, A., Dagamajalu, S., Velikkakath, A. K. G., Abhinand, C. S., Kanekar, S., Prasad, T. S. K., Balaya, R. D. A., & Raju, R. (2024). A global phosphosite-correlated network map of Thousand And One Kinase 1 (TAOK1). The international journal of biochemistry & cell biology, 106558. Advance online publication. https://doi.org/10.1016/j.biocel.2024.106558 published on : 2024 Mar 11
Shaji, V., Dagamajalu, S., Sanjeev, D., George, M., Kanekar, S., Prasad, G., Keshava Prasad, T. S., Raju, R., & Devasahayam Arokia Balaya, R. (2024). Deciphering the Receptor-Mediated Signaling Pathways of Interleukin-19 and Interleukin-20. Journal of interferon & cytokine research : the official journal of the International Society for Interferon and Cytokine Research, 10.1089/jir.2024.0009. Advance online publication. https://doi.org/10.1089/jir.2024.0009 published on : 2024 Mar 06
Gopal, D., Muthuraj, R., Balaya, R. D. A., Kanekar, S., Ahmed, I., & Chandrasekaran, J. (2024). Computational discovery of novel FYN kinase inhibitors: a cheminformatics and machine learning-driven approach to targeted cancer and neurodegenerative therapy. Molecular diversity, 10.1007/s11030-024-10819-7. Advance online publication. https://doi.org/10.1007/s11030-024-10819-7 published on : 2024 Feb 28
Hemavathi, K. N., Skariyachan, S., Raju, R., Keshava Prasad, T. S., & Abhinand, C. S. (2024). Computational screening of potential anti-inflammatory leads from Jeevaneeya Rasayana plants targeting COX-2 and 5- LOX by molecular docking and dynamic simulation approaches. Computers in biology and medicine, 171, 108164. Advance online publication. https://doi.org/10.1016/j.compbiomed.2024.108164 published on : 2024 Feb 15
Niarakis, A., Ostaszewski, M., Mazein, A., Kuperstein, I., Kutmon, M., Gillespie, M. E., Funahashi, A., Acencio, M. L., Hemedan, A., Aichem, M., Klein, K., Czauderna, T., Burtscher, F., Yamada, T. G., Hiki, Y., Hiroi, N. F., Hu, F., Pham, N., Ehrhart, F., Willighagen, E. L., … COVID-19 Disease Map Community (2024). Drug-target identification in COVID-19 disease mechanisms using computational systems biology approaches. Frontiers in immunology, 14, 1282859. https://doi.org/10.3389/fimmu.2023.1282859 published on : 2024 Feb 13
Karpagavalli, K., Magdaline, J. D., Chithambarathanu, T., Vijaya, P., & Amjesh, R. (2024). Quantum chemical evaluation, ELF, LOL analysis, Fukui, herbicide-likeness and molecular docking studies of 4-methyl-phenoxyacetic acid, 4-acetyl-phenoxyacetic acid and 4-tert-butyl-phenoxyacetic acid – a comparative study. Structural Chemistry. https://doi.org/10.1007/s11224-023-02271-4 published on : 2024 Feb 03
Giridhara Prema, S., Chandrasekaran, J., Kanekar, S., George, M., Prasad, T. S. K., Raju, R., Dagamajalu, S., & Balaya, R. D. A. (2024). Cisplatin and Procaterol Combination in Gastric Cancer? Targeting Checkpoint Kinase 1 for Cancer Drug Discovery and Repurposing by an Integrated Computational and Experimental Approach. Omics : a journal of integrative biology, 10.1089/omi.2023.0163. Advance online publication. https://doi.org/10.1089/omi.2023.0163 published on : 2024 jan 08
Krishnan, D., Babu, S., Raju, R., Veettil, M. V., Prasad, T. S. K., & Abhinand, C. S. (2024). Epstein-Barr Virus: Human Interactome Reveals New Molecular Insights into Viral Pathogenesis for Potential Therapeutics and Antiviral Drug Discovery. Omics : a journal of integrative biology, 10.1089/omi.2023.0241. Advance online publication. https://doi.org/10.1089/omi.2023.0241 published on : 2024 jan 08
Mahin, A., Soman, S. P., Modi, P. K., Raju, R., Keshava Prasad, T. S., & Abhinand, C. S. (2024). Meta-analysis of the serum/plasma proteome identifies significant associations between COVID-19 with Alzheimer's/Parkinson's diseases. Journal of neurovirology, 10.1007/s13365-023-01191-7. Advance online publication. https://doi.org/10.1007/s13365-023-01191-7 published on : 2024 Jan 02
Sreelakshmi, K., Hemavathi, K. N., Raju, R., Sameer, K. V. B., Keshava Prasad, T. S., Sudhakaran, P. R., & Abhinand, C. S. (2023). Identification and stability analysis of potential ADP-ribose modification sites on vascular endothelial growth factor (VEGF) through molecular dynamics simulation. Journal of biomolecular structure & dynamics, 1–9. Advance online publication. https://doi.org/10.1080/07391102.2023.2297821 published on : 2023 Dec 26
Ramakrishnan, K., Babu, S., Shaji, V., Soman, S., Leelamma, A., Rehman, N., & Raju, R. (2023). Hepatitis B Virus Modulated Transcriptional Regulatory Map of Hepatic Cellular MicroRNAs. Omics : a journal of integrative biology, 27(12), 581–597. https://doi.org/10.1089/omi.2023.0171 published on : 2023 Dec 8
Varghese, B., Babu, S., Jala, A., Das, P., Raju, R., Borkar, R. M., & Adela, R. (2023). Integrative Placental Multi-Omics Analysis Reveals Perturbed Pathways and Potential Prognostic Biomarkers in Gestational Hypertension. Archives of medical research, 55(1), 102909. Advance online publication. https://doi.org/10.1016/j.arcmed.2023.102909 published on : 2023 Nov 18
Kalath, H., Koshy, A. J., Banjan, B., Soman, S., Hosadevasthana, G., Raju, R., Rehman, N., & Revikumar, A. (2023). In-silico studies of Brassica oleracea active compounds and their role in thyroid peroxidase activity. Journal of biomolecular structure & dynamics, 1–17. Advance online publication. https://doi.org/10.1080/07391102.2023.2270601 published on : 2023 Oct 23
Thatai, A. K. S., Ammankallu, S., Devasahayam Arokia Balaya, R., Soman, S. P., Nisar, M., Babu, S., John, L., George, A., Anto, C. K., Sanjeev, D., Kandiyil, M. K., Raj, S. S., Awasthi, K., Vinodchandra, S. S., Prasad, T. S. K., & Raju, R. (2023). VirhostlncR: A comprehensive database to explore lncRNAs and their targets in viral infections. Computers in biology and medicine, 164, 107279. https://doi.org/10.1016/j.compbiomed.2023.107279 published on : 2023 Sep 16
Devadasan, M. J., Ramesha, K. P., Ramesh, P., Kootimole, C. N., Jeyakumar, S., Ashwitha, A., Ammankallu, S., Rai, A. B., Kumaresan, A., Vedamurthy, V. G., Raju, R., Das, D. N., Kataktalware, M. A., & Prasad, T. S. K. (2023). Exploring molecular dynamic indicators associated with reproductive performance of Bos indicus cattle in blood plasma samples through data-independent acquisition mass spectrometry. Journal of proteomics, 285, 104950. https://doi.org/10.1016/j.jprot.2023.104950 published on : 2023 Aug 15
Banjan, B., Krishnan, D., Koshy, A. J., Soman, S., Leelamma, A., Raju, R., & Revikumar, A. (2023). In-silico screening and identification of potential drug-like compounds for dengue-associated thrombocytopenia from Carica papaya leaf extracts. Journal of biomolecular structure & dynamics, 1–19. Advance online publication. https://doi.org/10.1080/07391102.2023.2230293 published on : 2023 Jul 2
Ramesh, P., Behera, S. K., Kotimoole, C. N., Mohanty, V., Raju, R., Prasad, T. S. K., & Codi, J. A. K. (2023). Mining proteomics data to extract post-translational modifications associated with gastric cancer. Amino acids, 55(8), 993–1001. https://doi.org/10.1007/s00726-023-03287-0 published on : 2023 June 13
Sanjeev, D., Dagamajalu, S., Shaji, V., George, M., Subbannayya, Y., Prasad, T. S. K., Raju, R., & Devasahayam Arokia Balaya, R. (2023). A network map of macrophage-stimulating protein (MSP) signaling. Journal of cell communication and signaling, 17(3), 1113–1120. https://doi.org/10.1007/s12079-023-00755-w published on : 2023 May 4
Devasahayam Arokia Balaya, R., Chandrasekaran, J., Kanekar, S., Kumar Modi, P., Dagamajalu, S., Gopinathan, K., Raju, R., & Prasad, T. S. K. (2023). Calcium/calmodulin-dependent protein kinase kinase 2 (CAMKK2) inhibitors: a novel approach in small molecule discovery. Journal of biomolecular structure & dynamics, 1–11. Advance online publication. https://doi.org/10.1080/07391102.2023.2193999 published on : 2023 Apr 8
Upadhyay, S. S., Devasahayam Arokia Balaya, R., Parate, S. S., Dagamajalu, S., Keshava Prasad, T. S., Shetty, R., & Raju, R. (2023). An assembly of TROP2-mediated signaling events. Journal of cell communication and signaling, 17(3), 1105–1111. https://doi.org/10.1007/s12079-023-00742-1 published on : 2023 Apr 4
Manjunath, V., Thenral, S. G., Lakshmi, B. R., Nalini, A., Bassi, A., Karthikeyan, K. P., Piyusha, K., Menon, R., Malhotra, A., Praveena, L. S., Anjanappa, R. M., & Murugan, S. M. S. (2023). Large Region of Homozygous (ROH) Identified in Indian Patients with Autosomal Recessive Limb-Girdle Muscular Dystrophy with p. Thr182Pro Variant in SGCB Gene. Human Mutation. https://doi.org/10.1155/2023/4362273 published on : 2023 Mar 28
Suchitha, G. P., Balaya, R. D. A., Raju, R., Keshava Prasad, T. S., & Dagamajalu, S. (2023). A network map of cytoskeleton-associated protein 4 (CKAP4) mediated signaling pathway in cancer. Journal of cell communication and signaling, 17(3), 1097–1104. https://doi.org/10.1007/s12079-023-00739-w published on : 2023 Mar 21
Chatterjee, O., Gopalakrishnan, L., Pullimamidi, D., Raj, C., Yelamanchi, S., Gangadharappa, B. S., Nair, B., Mahadevan, A., Raju, R., & Keshava Prasad, T. S. (2023). A molecular network map of orexin-orexin receptor signaling system. Journal of cell communication and signaling, 17(1), 217–227. https://doi.org/10.1007/s12079-022-00700-3 published on : 2023 Mar 17
Revikumar A. (2023). An Omics Strategy for Translational Bioinformatics and Rapid COVID-19 Drug Repurposing. Omics : a journal of integrative biology, 27(3), 109–115. https://doi.org/10.1089/omi.2022.0157 published on : 2023 Mar 15
Abhinand, C. S., Galipon, J., Mori, M., Ramesh, P., Prasad, T. S. K., Raju, R., Sudhakaran, P. R., & Tomita, M. (2023). Temporal phosphoproteomic analysis of VEGF-A signaling in HUVECs: an insight into early signaling events associated with angiogenesis. Journal of cell communication and signaling, 17(3), 1067–1079. https://doi.org/10.1007/s12079-023-00736-z published on : 2023 Mar 7
Kumar, S., Balaya, R. D. A., Kanekar, S., Raju, R., Prasad, T. S. K., & Kandasamy, R. K. (2023). Computational tools for exploring peptide-membrane interactions in gram-positive bacteria. Computational and structural biotechnology journal, 21, 1995–2008. https://doi.org/10.1016/j.csbj.2023.02.051 published on : 2023 Mar 2
Sankaran, D., Amjesh, R., Paul, A. M., George, B., Kala, R., Saini, S., & Kumar, R. (2023). Hyperactivation of p21-Activated Kinases in Human Cancer and Therapeutic Sensitivity. Biomedicines, 11(2), 462. https://doi.org/10.3390/biomedicines11020462 published on : 2023 Feb 5
Mol, P., Balaya, R. D. A., Dagamajalu, S., Babu, S., Chandrasekaran, P., Raghavan, R., Suresh, S., Ravishankara, N., Raju, A. H., Nair, B., Modi, P. K., Mahadevan, A., Prasad, T. S. K., & Raju, R. (2023). A network map of GDNF/RET signaling pathway in physiological and pathological conditions. Journal of cell communication and signaling, 17(3), 1089–1095. https://doi.org/10.1007/s12079-023-00726-1 published on : 2023 Jan 30
Abhinand, C. S., Prabhakaran, A. A., Krishnamurthy, A., Raju, R., Keshava Prasad, T. S., Nair, A. S., Rajasekharan, K. N., Oommen, O. V., & Sudhakaran, P. R. (2022). SARS-CoV-2 variants infectivity prediction and therapeutic peptide design using computational approaches. Journal of biomolecular structure & dynamics, 1–12. Advance online publication. https://doi.org/10.1080/07391102.2022.2160819 published on : 2022 Dec 26
Abhinand, C. S., Ibrahim, J., Keshava Prasad, T. S., Raju, R., Oommen, O. V., & Nair, A. S. (2022). Molecular docking and dynamics studies for the identification of Nipah virus glycoprotein inhibitors from Indian medicinal plants. Journal of biomolecular structure & dynamics, 1–8. Advance online publication. https://doi.org/10.1080/07391102.2022.2153169 published on : 2022 Dec 06
Ramesh, P., Babu, S., Ammankallu, S., Codi, J. A. K., Prasad, T. S. K., & Raju, R. (2023). Helicobacter pylori regulated microRNA map of human gastric cells. Helicobacter, 28(1), e12941. https://doi.org/10.1111/hel.12941 published on : 2022 Dec 05
Dagamajalu, S., Rex, D. A. B., Suchitha, G. P., Rai, A. B., Kumar, S., Joshi, S., Raju, R., & Prasad, T. S. K. (2023). A network map of discoidin domain receptor 1(DDR1)-mediated signaling in pathological conditions. Journal of cell communication and signaling, 17(3), 1081–1088. https://doi.org/10.1007/s12079-022-00714-x published on : 2022 Dec 1
Terlouw, B. R., Blin, K., Navarro-Muñoz, J. C., Avalon, N. E., Chevrette, M. G., Egbert, S., Lee, S., Meijer, D., Recchia, M. J. J., Reitz, Z. L., van Santen, J. A., Selem-Mojica, N., Tørring, T., Zaroubi, L., Alanjary, M., Aleti, G., Aguilar, C., Al-Salihi, S. A. A., Augustijn, H. E., Avelar-Rivas, J. A., … Medema, M. H. (2023). MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters. Nucleic acids research, 51(D1), D603–D610. https://doi.org/10.1093/nar/gkac1049 published on : 2022 Nov 18
Kumari, G., Rex, D. A. B., Goswami, S., Mukherjee, S., Biswas, S., Maurya, P., Jain, R., Garg, S., Prasad, T. S. K., Pati, S., Ramalingam, S., Mohandas, N., & Singh, S. (2022). Dynamic Palmitoylation of Red Cell Membrane Proteins Governs Susceptibility to Invasion by the Malaria Parasite, Plasmodium falciparum. ACS infectious diseases, 8(10), 2106–2118. https://doi.org/10.1021/acsinfecdis.2c00199 published on : 2022 Oct 14
Anam, Z., Kumari, G., Mukherjee, S., Rex, D. A. B., Biswas, S., Maurya, P., Ravikumar, S., Gupta, N., Kushawaha, A. K., Sah, R. K., Chaurasiya, A., Singhal, J., Singh, N., Kaushik, S., Prasad, T. S. K., Pati, S., Ranganathan, A., & Singh, S. (2022). Complementary crosstalk between palmitoylation and phosphorylation events in MTIP regulates its role during Plasmodium falciparum invasion. Frontiers in cellular and infection microbiology, 12, 924424. https://doi.org/10.3389/fcimb.2022.924424 published on : 2022 Sep 29
Gopalakrishnan, L., Chatterjee, O., Ravishankar, N., Suresh, S., Raju, R., Mahadevan, A., & Prasad, T. S. K. (2022). Opioid receptors signaling network. Journal of cell communication and signaling, 16(3), 475–483. https://doi.org/10.1007/s12079-021-00653-z published on : 2022 Sep 16
Antil, N., Arefian, M., Kandiyil, M. K., Awasthi, K., Prasad, T. S. K., & Raju, R. (2022). The Core Human MicroRNAs Regulated by Toxoplasma gondii. MicroRNA (Shariqah, United Arab Emirates), 11(2), 163–174. https://doi.org/10.2174/2211536611666220428130250 published on : 2022 Aug 15
Rex, D. A. B., Dagamajalu, S., Gouda, M. M., Suchitha, G. P., Chanderasekaran, J., Raju, R., Prasad, T. S. K., & Bhandary, Y. P. (2023). A comprehensive network map of IL-17A signaling pathway. Journal of cell communication and signaling, 17(1), 209–215. https://doi.org/10.1007/s12079-022-00686-y published on : 2022 Jul 15
Rex, D. A. B., Keshava Prasad, T. S., & Kandasamy, R. K. (2022). Revisiting Regulated Cell Death Responses in Viral Infections. International journal of molecular sciences, 23(13), 7023. https://doi.org/10.3390/ijms23137023 published on : 2022 Jun 24
Aravind, A., Palollathil, A., Rex, D. A. B., Kumar, K. M. K., Vijayakumar, M., Shetty, R., Codi, J. A. K., Prasad, T. S. K., & Raju, R. (2022). A multi-cellular molecular signaling and functional network map of C-C motif chemokine ligand 18 (CCL18): a chemokine with immunosuppressive and pro-tumor functions. Journal of cell communication and signaling, 16(2), 293–300. https://doi.org/10.1007/s12079-021-00633-3 published on : 2022 Jun 16
Revikumar, A., Kashyap, V., Palollathil, A., Aravind, A., Raguraman, R., Kumar, K. M. K., Vijayakumar, M., Prasad, T. S. K., & Raju, R. (2022). Multiple G-quadruplex binding ligand induced transcriptomic map of cancer cell lines. Journal of cell communication and signaling, 16(1), 129–135. https://doi.org/10.1007/s12079-021-00637-z published on : 2022 Mar 16
Poruthukaren, K., Henna, F., Nisar, M., Sreelan, S., Samseera, Kotian, S., & Raju, R. (2024). HomoeOmicsDB: A global reference platform for accelerating basic and application research in homeopathy. International Journal of High Dilution Research - ISSN 1982-6206, 24(1), 40–41. https://doi.org/10.51910/ijhdr.v24i1.1484 published on : 2024 Dec 02
Kalath, H., Vishwakarma, R., Banjan, B., Ramakrishnan, K., Koshy, A. J., Raju, R., Rehman, N., & Revikumar, A. (2024). In-silico studies on evaluating the liver-protective effectiveness of a polyherbal formulation in preventing hepatocellular carcinoma progression. In silico pharmacology, 12(2), 109. https://doi.org/10.1007/s40203-024-00285-2 published on : 2024 Nov 19
Hemavathi, K. N., Middha, S. K., Raju, R., Pilankatta, R., Keshava Prasad, T. S., & Abhinand, C. S. (2024). Computational screening of phytocompounds from C. amboinicus identifies potential inhibitors of influenza A (H3N2) virus by targeting hemagglutinin. Journal of biomolecular structure & dynamics, 1–13. Advance online publication. https://doi.org/10.1080/07391102.2024.2424940 published on : 2024 Nov 09
Cartlidge, M. K., Brown, K. K., Chaudhuri, N., Corte, T. J., Dieudé, P., John, L., Kelly, C., Khanna, D., McRorie, E., Nicol, L., Stewart, G., Walsh, S. L. F., Wijsenbeek, M., Hirani, N., & PASSWRD participants (2024). A modified Delphi exercise in physician-perceived risk factors for drug-induced pneumotoxicity in patients with rheumatological disease. BMC pulmonary medicine, 24(1), 547. https://doi.org/10.1186/s12890-024-03287-0 published on : 2024 Oct 31
Palollathil, A., Nandakumar, R., Ahmed, M., Velikkakath, A. K. G., Nisar, M., Nisar, M., Devasahayam Arokia Balaya, R., Parate, S. S., Hanehalli, V., Mahin, A., Mathew, R. T., Shetty, R., Codi, J. A. K., Revikumar, A., Vijayakumar, M., Prasad, T. S. K., & Raju, R. (2024). HNCDrugResDb: a platform for deciphering drug resistance in head and neck cancers. Scientific reports, 14(1), 25327. https://doi.org/10.1038/s41598-024-75861-9 published on : 2024 Oct 25
Gupta, D. R., Dwivedi, P. S. R., Koshy, A. J., Anusha, S., Ranjitha, A., Rehman, N., & Kumar, P. (2024). Insights into benzothiazolyl-coupled azetidinone moieties toward EGFR binding and stability analysis—Evidence from molecular docking and dynamics simulation. Peptide Science. https://doi.org/10.1002/pep2.24382 published on : 2024 Aug 28
Ramesh, P., Nisar, M., Neha, Ammankallu, S., Babu, S., Nandakumar, R., Abhinand, C. S., Prasad, T. S. K., Codi, J. A. K., & Raju, R. (2024). Delineating protein biomarkers for gastric cancers: A catalogue of mass spectrometry-based markers and assessment of their suitability for targeted proteomics applications. Journal of Proteomics, 306, 105262. https://doi.org/10.1016/j.jprot.2024.105262 published on : 2024 Jul 23
Rajesh, G. D., Koshy, A. J., Akshay, S. D., Dwivedi, P. S. R., Ashtekar, H., Rehman, N., & Kumar, P. (2024). Inhibition of β-lactamase by novel benzothiazole-coupled azetidinone derivatives: A comprehensive study using an in-silico and in-vitro approaches against multi drug resistant bacteria. Journal of Computational Biophysics and Chemistry, 12(7), 123-134. https://doi.org/10.1142/S2737416524500340 published on : 2024 Jul 09
Banjan, B., Vishwakarma, R., Ramakrishnan, K., Dev, R. R., Kalath, H., Kumar, P., Soman, S., Raju, R., Revikumar, A., Rehman, N., & Abhinand, C. S. (2024). Targeting AFP-RARβ complex formation: a potential strategy for treating AFP-positive hepatocellular carcinoma. Molecular diversity, 10.1007/s11030-024-10915-8. Advance online publication. https://doi.org/10.1007/s11030-024-10915-8 published on : 2024 Jul 02
John, L., George, M., Dcunha, L., Nisar, M., Sanjeev, D., Pahal, P., Perunelly Gopalakrishnan, A., Basthikoppa Shivamurthy, P., Sreelan, S., Yandigeri, T., Kanekar, S., Raju, R., & Devasahayam Arokia Balaya, R. (2024). Elucidating the phosphoregulatory network of predominant phosphosite in AXL kinase: An integrative bioinformatic approach. Journal of Proteins and Proteomics. https://doi.org/10.1007/s42485-024-00147-7 published on : 2024 Jun 19
Sanjeev, D., Mendon, S., George, M., John, L., Perunelly Gopalakrishnan, A., Nisar, M., Rafi, A., Priyanka, P., Yandigeri, T., Raju, R., Kanekar, S., & Devasahayam Arokia Balaya, R. (2024). Exploring the phospho-landscape of NEK6 kinase: Systematic annotation of phosphosites and their implications as biomarkers in carcinogenesis. Journal of Proteins and Proteomics. https://doi.org/10.1007/s42485-024-00146-8 published on : 2024 Jun 15
Ramakrishnan, K., Vishwakarma, R., Dev, R. R., Raju, R., & Rehman, N. (2024). Etiologically Significant microRNAs in Hepatitis B Virus-Induced Hepatocellular Carcinoma. Omics : a journal of integrative biology, 10.1089/omi.2024.0071. Advance online publication. https://doi.org/10.1089/omi.2024.0071 published on : 2024 May 31
Daniel Thomas, S., Vijayakumar, K., John, L., Krishnan, D., Rehman, N., Revikumar, A., Kandel Codi, J. A., Prasad, T. S. K., S S, V., & Raju, R. (2024). Machine Learning Strategies in MicroRNA Research: Bridging Genome to Phenome. Omics : a journal of integrative biology, 10.1089/omi.2024.0047. Advance online publication. https://doi.org/10.1089/omi.2024.0047 published on : 2024 May 15
Banjan, B., Raju, R., Keshava Prasad, T. S., & Abhinand, C. S. (2024). Computational identification of potential bioactive compounds from Triphala against alcoholic liver injury by targeting alcohol dehydrogenase. Molecular diversity, 10.1007/s11030-024-10879-9. Advance online publication. https://doi.org/10.1007/s11030-024-10879-9 published on : 2024 May 14
Aravind, A., Nandakumar, R., Ahmed, M., Nisar, M., Palollathil, A., Kanichery, A., Sreelan, S., Sinan, K. M., Balaya, R. D. A., Vijayakumar, M., Prasad, T. S. K., & Raju, R. (2024). REMEMProt: a resource of membrane-enriched proteome profiles, their disease associations, and biomarker status. Life science alliance, 7(7), e202302443. https://doi.org/10.26508/lsa.202302443 published on : 2024 May 07
Mahin, A., Chikmagalur Ravindra, S., Ramesh, P., Naik, P., Raju, R., Keshava Prasad, T. S., & Abhinanad, C. S. (2024). Unveiling Actin Cytoskeleton Role in Mediating Chikungunya-Associated Arthritis: An Integrative Proteome-Metabolome Study. Vector borne and zoonotic diseases (Larchmont, N.Y.), 10.1089/vbz.2024.0018. Advance online publication. https://doi.org/10.1089/vbz.2024.0018 published on : 2024 May 07
Suchitha, G. P., Devasahayam Arokia Balaya, R., Prasad, T. S. K., & Dagamajalu, S. (2024). A signaling network map of Lipoxin (LXA4): an anti-inflammatory molecule. Inflammation research : official journal of the European Histamine Research Society ... [et al.], 10.1007/s00011-024-01885-6. Advance online publication. https://doi.org/10.1007/s00011-024-01885-6 published on : 2024 Apr 26
Suchitha, G. P., Dagamajalu, S., Keshava Prasad, T. S., & Devasahayam Arokia Balaya, R. (2024). A Comprehensive Network Map of Interleukin-26 Signaling Pathway. Journal of interferon & cytokine research : the official journal of the International Society for Interferon and Cytokine Research, 10.1089/jir.2024.0026. Advance online publication. https://doi.org/10.1089/jir.2024.0026 published on : 2024 Apr 19
Vishwakarma, R., Ramakrishnan, K., & Rehman, N. (2024). Riddling Substitution of "hsa" to "has" in the Enigmatic MicroRNA Nomenclature. Omics : a journal of integrative biology, 10.1089/omi.2023.0248. Advance online publication. https://doi.org/10.1089/omi.2023.0248 published on : 2024 Apr 08
Thimmappa, P. Y., Nair, A. S., D'silva, S., Aravind, A., Mallya, S., Soman, S. P., Guruprasad, K. P., Shastry, S., Raju, R., Prasad, T. S. K., & Joshi, M. B. (2024). Neutrophils display distinct post-translational modifications in response to varied pathological stimuli. International immunopharmacology, 132, 111950. Advance online publication. https://doi.org/10.1016/j.intimp.2024.111950 published on : 2024 Apr 03
Banjan, B., Koshy, A. J., Kalath, H., John, L., Soman, S., Raju, R., & Revikumar, A. (2024). Potential protein kinase inhibitors that target G-quadruplex DNA structures in the human telomeric regions. Molecular diversity, 10.1007/s11030-023-10768-7. Advance online publication. https://doi.org/10.1007/s11030-023-10768-7 published on : 2024 Mar 21
Sanjeev, D., George, M., John, L., Gopalakrishnan, A. P., Priyanka, P., Mendon, S., Yandigeri, T., Nisar, M., Nisar, M., Kanekar, S., Balaya, R. D. A., & Raju, R. (2024). Tyr352 as a Predominant Phosphosite in the Understudied Kinase and Molecular Target, HIPK1: Implications for Cancer Therapy. Omics : a journal of integrative biology, 10.1089/omi.2023.0244. Advance online publication. https://doi.org/10.1089/omi.2023.0244 published on : 2024 Mar 18
Priyanka, P., Gopalakrishnan, A. P., Nisar, M., Shivamurthy, P. B., George, M., John, L., Sanjeev, D., Yandigeri, T., Thomas, S. D., Rafi, A., Dagamajalu, S., Velikkakath, A. K. G., Abhinand, C. S., Kanekar, S., Prasad, T. S. K., Balaya, R. D. A., & Raju, R. (2024). A global phosphosite-correlated network map of Thousand And One Kinase 1 (TAOK1). The international journal of biochemistry & cell biology, 106558. Advance online publication. https://doi.org/10.1016/j.biocel.2024.106558 published on : 2024 Mar 11
Shaji, V., Dagamajalu, S., Sanjeev, D., George, M., Kanekar, S., Prasad, G., Keshava Prasad, T. S., Raju, R., & Devasahayam Arokia Balaya, R. (2024). Deciphering the Receptor-Mediated Signaling Pathways of Interleukin-19 and Interleukin-20. Journal of interferon & cytokine research : the official journal of the International Society for Interferon and Cytokine Research, 10.1089/jir.2024.0009. Advance online publication. https://doi.org/10.1089/jir.2024.0009 published on : 2024 Mar 06
Gopal, D., Muthuraj, R., Balaya, R. D. A., Kanekar, S., Ahmed, I., & Chandrasekaran, J. (2024). Computational discovery of novel FYN kinase inhibitors: a cheminformatics and machine learning-driven approach to targeted cancer and neurodegenerative therapy. Molecular diversity, 10.1007/s11030-024-10819-7. Advance online publication. https://doi.org/10.1007/s11030-024-10819-7 published on : 2024 Feb 28
Hemavathi, K. N., Skariyachan, S., Raju, R., Keshava Prasad, T. S., & Abhinand, C. S. (2024). Computational screening of potential anti-inflammatory leads from Jeevaneeya Rasayana plants targeting COX-2 and 5- LOX by molecular docking and dynamic simulation approaches. Computers in biology and medicine, 171, 108164. Advance online publication. https://doi.org/10.1016/j.compbiomed.2024.108164 published on : 2024 Feb 15
Niarakis, A., Ostaszewski, M., Mazein, A., Kuperstein, I., Kutmon, M., Gillespie, M. E., Funahashi, A., Acencio, M. L., Hemedan, A., Aichem, M., Klein, K., Czauderna, T., Burtscher, F., Yamada, T. G., Hiki, Y., Hiroi, N. F., Hu, F., Pham, N., Ehrhart, F., Willighagen, E. L., … COVID-19 Disease Map Community (2024). Drug-target identification in COVID-19 disease mechanisms using computational systems biology approaches. Frontiers in immunology, 14, 1282859. https://doi.org/10.3389/fimmu.2023.1282859 published on : 2024 Feb 13
Karpagavalli, K., Magdaline, J. D., Chithambarathanu, T., Vijaya, P., & Amjesh, R. (2024). Quantum chemical evaluation, ELF, LOL analysis, Fukui, herbicide-likeness and molecular docking studies of 4-methyl-phenoxyacetic acid, 4-acetyl-phenoxyacetic acid and 4-tert-butyl-phenoxyacetic acid – a comparative study. Structural Chemistry. https://doi.org/10.1007/s11224-023-02271-4 published on : 2024 Feb 03
Giridhara Prema, S., Chandrasekaran, J., Kanekar, S., George, M., Prasad, T. S. K., Raju, R., Dagamajalu, S., & Balaya, R. D. A. (2024). Cisplatin and Procaterol Combination in Gastric Cancer? Targeting Checkpoint Kinase 1 for Cancer Drug Discovery and Repurposing by an Integrated Computational and Experimental Approach. Omics : a journal of integrative biology, 10.1089/omi.2023.0163. Advance online publication. https://doi.org/10.1089/omi.2023.0163 published on : 2024 jan 08
Krishnan, D., Babu, S., Raju, R., Veettil, M. V., Prasad, T. S. K., & Abhinand, C. S. (2024). Epstein-Barr Virus: Human Interactome Reveals New Molecular Insights into Viral Pathogenesis for Potential Therapeutics and Antiviral Drug Discovery. Omics : a journal of integrative biology, 10.1089/omi.2023.0241. Advance online publication. https://doi.org/10.1089/omi.2023.0241 published on : 2024 jan 08
Mahin, A., Soman, S. P., Modi, P. K., Raju, R., Keshava Prasad, T. S., & Abhinand, C. S. (2024). Meta-analysis of the serum/plasma proteome identifies significant associations between COVID-19 with Alzheimer's/Parkinson's diseases. Journal of neurovirology, 10.1007/s13365-023-01191-7. Advance online publication. https://doi.org/10.1007/s13365-023-01191-7 published on : 2024 Jan 02
Sreelakshmi, K., Hemavathi, K. N., Raju, R., Sameer, K. V. B., Keshava Prasad, T. S., Sudhakaran, P. R., & Abhinand, C. S. (2023). Identification and stability analysis of potential ADP-ribose modification sites on vascular endothelial growth factor (VEGF) through molecular dynamics simulation. Journal of biomolecular structure & dynamics, 1–9. Advance online publication. https://doi.org/10.1080/07391102.2023.2297821 published on : 2023 Dec 26
Ramakrishnan, K., Babu, S., Shaji, V., Soman, S., Leelamma, A., Rehman, N., & Raju, R. (2023). Hepatitis B Virus Modulated Transcriptional Regulatory Map of Hepatic Cellular MicroRNAs. Omics : a journal of integrative biology, 27(12), 581–597. https://doi.org/10.1089/omi.2023.0171 published on : 2023 Dec 8
Varghese, B., Babu, S., Jala, A., Das, P., Raju, R., Borkar, R. M., & Adela, R. (2023). Integrative Placental Multi-Omics Analysis Reveals Perturbed Pathways and Potential Prognostic Biomarkers in Gestational Hypertension. Archives of medical research, 55(1), 102909. Advance online publication. https://doi.org/10.1016/j.arcmed.2023.102909 published on : 2023 Nov 18
Kalath, H., Koshy, A. J., Banjan, B., Soman, S., Hosadevasthana, G., Raju, R., Rehman, N., & Revikumar, A. (2023). In-silico studies of Brassica oleracea active compounds and their role in thyroid peroxidase activity. Journal of biomolecular structure & dynamics, 1–17. Advance online publication. https://doi.org/10.1080/07391102.2023.2270601 published on : 2023 Oct 23
Thatai, A. K. S., Ammankallu, S., Devasahayam Arokia Balaya, R., Soman, S. P., Nisar, M., Babu, S., John, L., George, A., Anto, C. K., Sanjeev, D., Kandiyil, M. K., Raj, S. S., Awasthi, K., Vinodchandra, S. S., Prasad, T. S. K., & Raju, R. (2023). VirhostlncR: A comprehensive database to explore lncRNAs and their targets in viral infections. Computers in biology and medicine, 164, 107279. https://doi.org/10.1016/j.compbiomed.2023.107279 published on : 2023 Sep 16
Devadasan, M. J., Ramesha, K. P., Ramesh, P., Kootimole, C. N., Jeyakumar, S., Ashwitha, A., Ammankallu, S., Rai, A. B., Kumaresan, A., Vedamurthy, V. G., Raju, R., Das, D. N., Kataktalware, M. A., & Prasad, T. S. K. (2023). Exploring molecular dynamic indicators associated with reproductive performance of Bos indicus cattle in blood plasma samples through data-independent acquisition mass spectrometry. Journal of proteomics, 285, 104950. https://doi.org/10.1016/j.jprot.2023.104950 published on : 2023 Aug 15
Banjan, B., Krishnan, D., Koshy, A. J., Soman, S., Leelamma, A., Raju, R., & Revikumar, A. (2023). In-silico screening and identification of potential drug-like compounds for dengue-associated thrombocytopenia from Carica papaya leaf extracts. Journal of biomolecular structure & dynamics, 1–19. Advance online publication. https://doi.org/10.1080/07391102.2023.2230293 published on : 2023 Jul 2
Ramesh, P., Behera, S. K., Kotimoole, C. N., Mohanty, V., Raju, R., Prasad, T. S. K., & Codi, J. A. K. (2023). Mining proteomics data to extract post-translational modifications associated with gastric cancer. Amino acids, 55(8), 993–1001. https://doi.org/10.1007/s00726-023-03287-0 published on : 2023 June 13
Sanjeev, D., Dagamajalu, S., Shaji, V., George, M., Subbannayya, Y., Prasad, T. S. K., Raju, R., & Devasahayam Arokia Balaya, R. (2023). A network map of macrophage-stimulating protein (MSP) signaling. Journal of cell communication and signaling, 17(3), 1113–1120. https://doi.org/10.1007/s12079-023-00755-w published on : 2023 May 4
Devasahayam Arokia Balaya, R., Chandrasekaran, J., Kanekar, S., Kumar Modi, P., Dagamajalu, S., Gopinathan, K., Raju, R., & Prasad, T. S. K. (2023). Calcium/calmodulin-dependent protein kinase kinase 2 (CAMKK2) inhibitors: a novel approach in small molecule discovery. Journal of biomolecular structure & dynamics, 1–11. Advance online publication. https://doi.org/10.1080/07391102.2023.2193999 published on : 2023 Apr 8
Upadhyay, S. S., Devasahayam Arokia Balaya, R., Parate, S. S., Dagamajalu, S., Keshava Prasad, T. S., Shetty, R., & Raju, R. (2023). An assembly of TROP2-mediated signaling events. Journal of cell communication and signaling, 17(3), 1105–1111. https://doi.org/10.1007/s12079-023-00742-1 published on : 2023 Apr 4
Manjunath, V., Thenral, S. G., Lakshmi, B. R., Nalini, A., Bassi, A., Karthikeyan, K. P., Piyusha, K., Menon, R., Malhotra, A., Praveena, L. S., Anjanappa, R. M., & Murugan, S. M. S. (2023). Large Region of Homozygous (ROH) Identified in Indian Patients with Autosomal Recessive Limb-Girdle Muscular Dystrophy with p. Thr182Pro Variant in SGCB Gene. Human Mutation. https://doi.org/10.1155/2023/4362273 published on : 2023 Mar 28
Suchitha, G. P., Balaya, R. D. A., Raju, R., Keshava Prasad, T. S., & Dagamajalu, S. (2023). A network map of cytoskeleton-associated protein 4 (CKAP4) mediated signaling pathway in cancer. Journal of cell communication and signaling, 17(3), 1097–1104. https://doi.org/10.1007/s12079-023-00739-w published on : 2023 Mar 21
Chatterjee, O., Gopalakrishnan, L., Pullimamidi, D., Raj, C., Yelamanchi, S., Gangadharappa, B. S., Nair, B., Mahadevan, A., Raju, R., & Keshava Prasad, T. S. (2023). A molecular network map of orexin-orexin receptor signaling system. Journal of cell communication and signaling, 17(1), 217–227. https://doi.org/10.1007/s12079-022-00700-3 published on : 2023 Mar 17
Revikumar A. (2023). An Omics Strategy for Translational Bioinformatics and Rapid COVID-19 Drug Repurposing. Omics : a journal of integrative biology, 27(3), 109–115. https://doi.org/10.1089/omi.2022.0157 published on : 2023 Mar 15
Abhinand, C. S., Galipon, J., Mori, M., Ramesh, P., Prasad, T. S. K., Raju, R., Sudhakaran, P. R., & Tomita, M. (2023). Temporal phosphoproteomic analysis of VEGF-A signaling in HUVECs: an insight into early signaling events associated with angiogenesis. Journal of cell communication and signaling, 17(3), 1067–1079. https://doi.org/10.1007/s12079-023-00736-z published on : 2023 Mar 7
Kumar, S., Balaya, R. D. A., Kanekar, S., Raju, R., Prasad, T. S. K., & Kandasamy, R. K. (2023). Computational tools for exploring peptide-membrane interactions in gram-positive bacteria. Computational and structural biotechnology journal, 21, 1995–2008. https://doi.org/10.1016/j.csbj.2023.02.051 published on : 2023 Mar 2
Sankaran, D., Amjesh, R., Paul, A. M., George, B., Kala, R., Saini, S., & Kumar, R. (2023). Hyperactivation of p21-Activated Kinases in Human Cancer and Therapeutic Sensitivity. Biomedicines, 11(2), 462. https://doi.org/10.3390/biomedicines11020462 published on : 2023 Feb 5
Mol, P., Balaya, R. D. A., Dagamajalu, S., Babu, S., Chandrasekaran, P., Raghavan, R., Suresh, S., Ravishankara, N., Raju, A. H., Nair, B., Modi, P. K., Mahadevan, A., Prasad, T. S. K., & Raju, R. (2023). A network map of GDNF/RET signaling pathway in physiological and pathological conditions. Journal of cell communication and signaling, 17(3), 1089–1095. https://doi.org/10.1007/s12079-023-00726-1 published on : 2023 Jan 30
Abhinand, C. S., Prabhakaran, A. A., Krishnamurthy, A., Raju, R., Keshava Prasad, T. S., Nair, A. S., Rajasekharan, K. N., Oommen, O. V., & Sudhakaran, P. R. (2022). SARS-CoV-2 variants infectivity prediction and therapeutic peptide design using computational approaches. Journal of biomolecular structure & dynamics, 1–12. Advance online publication. https://doi.org/10.1080/07391102.2022.2160819 published on : 2022 Dec 26
Abhinand, C. S., Ibrahim, J., Keshava Prasad, T. S., Raju, R., Oommen, O. V., & Nair, A. S. (2022). Molecular docking and dynamics studies for the identification of Nipah virus glycoprotein inhibitors from Indian medicinal plants. Journal of biomolecular structure & dynamics, 1–8. Advance online publication. https://doi.org/10.1080/07391102.2022.2153169 published on : 2022 Dec 06
Ramesh, P., Babu, S., Ammankallu, S., Codi, J. A. K., Prasad, T. S. K., & Raju, R. (2023). Helicobacter pylori regulated microRNA map of human gastric cells. Helicobacter, 28(1), e12941. https://doi.org/10.1111/hel.12941 published on : 2022 Dec 05
Dagamajalu, S., Rex, D. A. B., Suchitha, G. P., Rai, A. B., Kumar, S., Joshi, S., Raju, R., & Prasad, T. S. K. (2023). A network map of discoidin domain receptor 1(DDR1)-mediated signaling in pathological conditions. Journal of cell communication and signaling, 17(3), 1081–1088. https://doi.org/10.1007/s12079-022-00714-x published on : 2022 Dec 1
Terlouw, B. R., Blin, K., Navarro-Muñoz, J. C., Avalon, N. E., Chevrette, M. G., Egbert, S., Lee, S., Meijer, D., Recchia, M. J. J., Reitz, Z. L., van Santen, J. A., Selem-Mojica, N., Tørring, T., Zaroubi, L., Alanjary, M., Aleti, G., Aguilar, C., Al-Salihi, S. A. A., Augustijn, H. E., Avelar-Rivas, J. A., … Medema, M. H. (2023). MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters. Nucleic acids research, 51(D1), D603–D610. https://doi.org/10.1093/nar/gkac1049 published on : 2022 Nov 18
Kumari, G., Rex, D. A. B., Goswami, S., Mukherjee, S., Biswas, S., Maurya, P., Jain, R., Garg, S., Prasad, T. S. K., Pati, S., Ramalingam, S., Mohandas, N., & Singh, S. (2022). Dynamic Palmitoylation of Red Cell Membrane Proteins Governs Susceptibility to Invasion by the Malaria Parasite, Plasmodium falciparum. ACS infectious diseases, 8(10), 2106–2118. https://doi.org/10.1021/acsinfecdis.2c00199 published on : 2022 Oct 14
Anam, Z., Kumari, G., Mukherjee, S., Rex, D. A. B., Biswas, S., Maurya, P., Ravikumar, S., Gupta, N., Kushawaha, A. K., Sah, R. K., Chaurasiya, A., Singhal, J., Singh, N., Kaushik, S., Prasad, T. S. K., Pati, S., Ranganathan, A., & Singh, S. (2022). Complementary crosstalk between palmitoylation and phosphorylation events in MTIP regulates its role during Plasmodium falciparum invasion. Frontiers in cellular and infection microbiology, 12, 924424. https://doi.org/10.3389/fcimb.2022.924424 published on : 2022 Sep 29
Gopalakrishnan, L., Chatterjee, O., Ravishankar, N., Suresh, S., Raju, R., Mahadevan, A., & Prasad, T. S. K. (2022). Opioid receptors signaling network. Journal of cell communication and signaling, 16(3), 475–483. https://doi.org/10.1007/s12079-021-00653-z published on : 2022 Sep 16
Antil, N., Arefian, M., Kandiyil, M. K., Awasthi, K., Prasad, T. S. K., & Raju, R. (2022). The Core Human MicroRNAs Regulated by Toxoplasma gondii. MicroRNA (Shariqah, United Arab Emirates), 11(2), 163–174. https://doi.org/10.2174/2211536611666220428130250 published on : 2022 Aug 15
Rex, D. A. B., Dagamajalu, S., Gouda, M. M., Suchitha, G. P., Chanderasekaran, J., Raju, R., Prasad, T. S. K., & Bhandary, Y. P. (2023). A comprehensive network map of IL-17A signaling pathway. Journal of cell communication and signaling, 17(1), 209–215. https://doi.org/10.1007/s12079-022-00686-y published on : 2022 Jul 15
Rex, D. A. B., Keshava Prasad, T. S., & Kandasamy, R. K. (2022). Revisiting Regulated Cell Death Responses in Viral Infections. International journal of molecular sciences, 23(13), 7023. https://doi.org/10.3390/ijms23137023 published on : 2022 Jun 24
Aravind, A., Palollathil, A., Rex, D. A. B., Kumar, K. M. K., Vijayakumar, M., Shetty, R., Codi, J. A. K., Prasad, T. S. K., & Raju, R. (2022). A multi-cellular molecular signaling and functional network map of C-C motif chemokine ligand 18 (CCL18): a chemokine with immunosuppressive and pro-tumor functions. Journal of cell communication and signaling, 16(2), 293–300. https://doi.org/10.1007/s12079-021-00633-3 published on : 2022 Jun 16
Revikumar, A., Kashyap, V., Palollathil, A., Aravind, A., Raguraman, R., Kumar, K. M. K., Vijayakumar, M., Prasad, T. S. K., & Raju, R. (2022). Multiple G-quadruplex binding ligand induced transcriptomic map of cancer cell lines. Journal of cell communication and signaling, 16(1), 129–135. https://doi.org/10.1007/s12079-021-00637-z published on : 2022 Mar 16